On May 21st and 22nd, I had the honor of having been chosen to attend the rOpenSci unconference 2018 in Seattle. It was a great event and I got to meet many amazing people! rOpenSci rOpenSci is a non-profit organisation that maintains a number of widely used R packages and is very active in promoting a community spirit around the R-world. Their core values are to have open and reproducible research, shared data and easy-to-use tools and to make all this accessible to a large number of people.

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Registration is now open for my 1.5-day workshop on deep learning with Keras and TensorFlow using R. It will take place on July 5th & 6th in Münster, Germany. You can read about one participant’s experience in my last workshop: Big Data – a buzz word you can find everywhere these days, from nerdy blogs to scientific research papers and even in the news. But how does Big Data Analysis work, exactly?

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When looking through the CRAN list of packages, I stumbled upon this little gem: pkgnet is an R library designed for the analysis of R libraries! The goal of the package is to build a graph representation of a package and its dependencies. And I thought it would be fun to play around with it. The little analysis I ended up doing was to compare dependencies of popular machine learning packages.

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Since I migrated my blog from Github Pages to blogdown and Netlify, I wanted to start migrating (most of) my old posts too - and use that opportunity to update them and make sure the code still works. Here I am updating my very first machine learning post from 27 Nov 2016: Can we predict flu deaths with Machine Learning and R?. Changes are marked as bold comments. The main changes I made are:

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In our next MünsteR R-user group meetup on Monday, June 11th, 2018 Thomas Kluth and Thorben Jensen will give a talk titled Look, something shiny: How to use R Shiny to make Münster traffic data accessible. You can RSVP here: http://meetu.ps/e/F7zDN/w54bW/f About a year ago, we stumbled upon rich datasets on traffic dynamics of Münster: count data of bikes, cars, and bus passengers of high resolution. Since that day we have been crunching, modeling, and visualizing it.

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On April 12th, 2018 I gave a talk about Explaining complex machine learning models with LIME at the Hamburg Data Science Meetup - so if you’re intersted: the slides can be found here: https://www.slideshare.net/ShirinGlander/hh-data-science-meetup-explaining-complex-machine-learning-models-with-lime-94218890 Traditional machine learning workflows focus heavily on model training and optimization; the best model is usually chosen via performance measures like accuracy or error and we tend to assume that a model is good enough for deployment if it passes certain thresholds of these performance criteria.

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On April 4th, 2018 I gave a talk about Deep Learning with Keras at the Ruhr.Py Meetup in Essen, Germany. The talk was not specific to Python, though - so if you’re intersted: the slides can be found here: https://www.slideshare.net/ShirinGlander/ruhrpy-introducing-deep-learning-with-keras-and-python Ruhr.PY - Introducing Deep Learning with Keras and Python von Shirin Glander There is also a video recording of my talk, which you can see here: https://youtu.

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Author's picture

Dr. Shirin Elsinghorst

Biologist turned Bioinformatician turned Data Scientist

Data Scientist

Münster, Germany